PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00020278001
Common NameGSBRNA2T00020278001, LOC106394576
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 187aa    MW: 20506.9 Da    PI: 9.406
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00020278001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof127.34.6e-402585262
               zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                         ++++lkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGGalrnvPvGgg+rkn k+s
  GSBRNA2T00020278001 25 EQEQLKCPRCDSPNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGALRNVPVGGGSRKNAKRS 85
                         57899****************************************************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027011.9E-332783IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.3942983IPR003851Zinc finger, Dof-type
ProDomPD0074786.0E-262984IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103167IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MQDPSAYYNS MMATQQQQQP QQFPEQEQLK CPRCDSPNTK FCYYNNYNLS QPRHFCKSCR  60
RYWTKGGALR NVPVGGGSRK NAKRSTSASS PPNTHKKKTK HPDPDTDPIR MLYGLPIGDQ  120
DVKGMEMGGG GSFSSLLASN MQLGLGGIIL DGSGWDPGMG LKRSEAGDEG GGNPWTDLSR  180
NRVEKN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.127180.0root| seed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893442e-89AC189344.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB042J11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013690599.11e-138PREDICTED: dof zinc finger protein DOF3.1-like
SwissprotQ94AR62e-78DOF31_ARATH; Dof zinc finger protein DOF3.1
TrEMBLA0A078J3C71e-138A0A078J3C7_BRANA; BnaCnng31430D protein
STRINGBra031269.1-P1e-109(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12692896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21270.15e-64DOF zinc finger protein 2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]